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1

The Sorghum bicolor genome and the diversification of grasses

Paterson, Andrew H., Bowers, John E., Bruggmann, Rémy, Dubchak, Inna, Grimwood, Jane, Gundlach, Heidrun, Haberer, Georg, Hellsten, Uffe, Mitros, Therese, Poliakov, Alexander

Journal:

Year:

2009

Language:

english

File:

PDF, 1.08 MB

english, 2009

2

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

Bombarely, Aureliano, Moser, Michel, Amrad, Avichai, Bao, Manzhu, Bapaume, Laure, Barry, Cornelius S., Bliek, Mattijs, Boersma, Maaike R., Borghi, Lorenzo, Bruggmann, Rémy, Bucher, Marcel, D'Agostino,

Journal:

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

3

Characterization and Transcriptomic Analysis of Porcine Blood Conventional and Plasmacytoid Dendritic Cells Reveals Striking Species-Specific Differences

Auray, Gael, Keller, Irene, Python, Sylvie, Gerber, Markus, Bruggmann, Remy, Ruggli, Nicolas, Summerfield, Artur

Journal:

The Journal of Immunology

Year:

2016

Language:

english

File:

PDF, 2.61 MB

english, 2016

4

Autism spectrum disorder associated with low serotonin in CSF and mutations in theSLC29A4plasma membrane monoamine transporter (PMAT) gene

Adamsen, Dea, Ramaekers, Vincent, Ho, Horace TB, Britschgi, Corinne, Rüfenacht, Véronique, Meili, David, Bobrowski, Elise, Philippe, Paule, Nava, Caroline, Van Maldergem, Lionel, Bruggmann, Rémy, Wali

Journal:

Molecular Autism

Year:

2014

Language:

english

File:

PDF, 929 KB

english, 2014

5

Xenacoelomorpha survey reveals that all 11 animal homeobox gene classes were present in the first bilaterians

Brauchle, Michael, Bilican, Adem, Eyer, Claudia, Bailly, Xavier, Martínez, Pedro, Ladurner, Peter, Bruggmann, Rémy, Sprecher, Simon G

Journal:

Genome Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 637 KB

english, 2018

6

Erratum: Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae

van Giesen, Lena, Hernandez-Nunez, Luis, Delasoie-Baranek, Sophie, Colombo, Martino, Renaud, Philippe, Bruggmann, Rémy, Benton, Richard, Samuel, Aravinthan D. T., Sprecher, Simon G.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 131 KB

english, 2016

7

Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae

van Giesen, Lena, Hernandez-Nunez, Luis, Delasoie-Baranek, Sophie, Colombo, Martino, Renaud, Philippe, Bruggmann, Rémy, Benton, Richard, Samuel, Aravinthan D. T., Sprecher, Simon G.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

8

Comparative sequence analysis ofVRN1alleles ofLolium perennewith the co-linear regions in barley, wheat, and rice

Torben Asp, Stephen Byrne, Heidrun Gundlach, Rémy Bruggmann, Klaus F. X. Mayer, Jeppe R. Andersen, Mingliang Xu, Morten Greve, Ingo Lenk, Thomas Lübberstedt

Journal:

Molecular Genetics and Genomics

Year:

2011

Language:

english

File:

PDF, 407 KB

english, 2011

9

Transcriptional changes in powdery mildew infected wheat and Arabidopsis leaves undergoing syringolin-triggered hypersensitive cell death at infection sites

Kathrin Michel, Olaf Abderhalden, Rémy Bruggmann, Robert Dudler

Journal:

Plant Molecular Biology

Year:

2006

Language:

english

File:

PDF, 449 KB

english, 2006

10

Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments

Agim Ballvora, Anika Jöcker, Prisca Viehöver, Hirofumi Ishihara, Jürgen Paal, Khalid Meksem, Rémy Bruggmann, Heiko Schoof, Bernd Weisshaar, Christiane Gebhardt

Journal:

Year:

2007

Language:

english

File:

PDF, 522 KB

english, 2007

11

Characterization of miRNA-regulated networks, hubs of signaling, and biomarkers in obstruction-induced bladder dysfunction

Gheinani, Ali Hashemi, Kiss, Bernhard, Moltzahn, Felix, Keller, Irene, Bruggmann, Rémy, Rehrauer, Hubert, Fournier, Catharine Aquino, Burkhard, Fiona C., Monastyrskaya, Katia

Journal:

Year:

2017

Language:

english

File:

PDF, 3.46 MB

english, 2017

12

Targeting CD70 with cusatuzumab eliminates acute myeloid leukemia stem cells in patients treated with hypomethylating agents

Riether, Carsten, Pabst, Thomas, HÃ¶pner, Sabine, Bacher, Ulrike, Hinterbrandner, Magdalena, Banz, Yara, MÃ¼ller, Rouven, Manz, Markus G., Gharib, Walid H., Francisco, David, Bruggmann, Remy, van Romp

Journal:

Nature Medicine

Year:

2020

File:

PDF, 2.68 MB

2020

13

Identification of a second encephalitis-associated astrovirus in cattle

Seuberlich, Torsten, Wüthrich, Daniel, Selimovic-Hamza, Senija, Drögemüller, Cord, Oevermann, Anna, Bruggmann, Rémy, Bouzalas, Ilias

Journal:

Emerging Microbes & Infections

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

14

Genomic approach to studying nutritional requirements of Clostridium tyrobutyricum and other Clostridia causing late blowing defects

Storari, Michelangelo, Kulli, Sandra, Wüthrich, Daniel, Bruggmann, Rémy, Berthoud, Hélène, Arias-Roth, Emmanuelle

Journal:

Food Microbiology

Year:

2016

Language:

english

File:

PDF, 1.26 MB

english, 2016

15

Analysis of epidermis- and mesophyll-specific transcript accumulation in powdery mildew-inoculated wheat leaves

Rémy Bruggmann, Olaf Abderhalden, Philippe Reymond, Robert Dudler

Journal:

Plant Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.87 MB

english, 2005

16

Contribution of epigenetic variation to adaptation in Arabidopsis

Schmid, Marc W., Heichinger, Christian, Coman Schmid, Diana, Guthörl, Daniela, Gagliardini, Valeria, Bruggmann, Rémy, Aluri, Sirisha, Aquino, Catharine, Schmid, Bernhard, Turnbull, Lindsay A., Grossni

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.67 MB

english, 2018

17

Neuropathological survey reveals underestimation of the prevalence of neuroinfectious diseases in cattle in Switzerland

Truchet, Laura, Walland, Julia, Wüthrich, Daniel, Boujon, Céline L., Posthaus, Horst, Bruggmann, Rémy, Schüpbach-Regula, Gertraud, Oevermann, Anna, Seuberlich, Torsten

Journal:

Veterinary Microbiology

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

18

Tumor necrosis factor-α initiates miRNA-mRNA signaling cascades in obstruction-induced bladder dysfunction

Koeck, Ivonne, Gheinani, Ali Hashemi, Baumgartner, Ulrich, Vassella, Erik, Bruggmann, Rémy, Burkhard, Fiona C., Monastyrskaya, Katia

Journal:

The American Journal of Pathology

Year:

2018

Language:

english

File:

PDF, 3.71 MB

english, 2018

19

Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination

Di Giallonardo, Francesca, Zagordi, Osvaldo, Duport, Yannick, Leemann, Christine, Joos, Beda, Künzli-Gontarczyk, Marzanna, Bruggmann, Rémy, Beerenwinkel, Niko, Günthard, Huldrych F., Metzner, Karin J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

20

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms

Greminger, Maja P, Stölting, Kai N, Nater, Alexander, Goossens, Benoit, Arora, Natasha, Bruggmann, Rémy, Patrignani, Andrea, Nussberger, Beatrice, Sharma, Reeta, Kraus, Robert H S, Ambu, Laurentius N,

Journal:

Year:

2014

Language:

english

File:

PDF, 604 KB

english, 2014

21

A frameshift mutation in the cubilin gene ( CUBN ) in Beagles with Imerslund-Gräsbeck syndrome (selective cobalamin malabsorption)

Drögemüller, Michaela, Jagannathan, Vidhya, Howard, Judith, Bruggmann, Rémy, Drögemüller, Cord, Ruetten, Maja, Leeb, Tosso, Kook, Peter H.

Journal:

Animal Genetics

Year:

2014

Language:

english

File:

PDF, 188 KB

english, 2014

22

Minor intron splicing is regulated by FUS and affected by ALS‐associated FUS mutants

Reber, Stefan, Stettler, Jolanda, Filosa, Giuseppe, Colombo, Martino, Jutzi, Daniel, Lenzken, Silvia C, Schweingruber, Christoph, Bruggmann, Rémy, Bachi, Angela, Barabino, Silvia ML, Mühlemann, Oliver

Journal:

The EMBO Journal

Year:

2016

Language:

english

File:

PDF, 2.34 MB

english, 2016

23

Dramatic Changes in the Ratio of Homologous Recombination to Nonhomologous DNA-End Joining in Oocytes and Early Embryos of Xenopus laevis

Hagmann, Michael, Adlkofer, Katrin, Pfeiffer, Petra, Bruggmann, Rémy, Georgiev, Oleg, Rungger, Duri, Schaffner, Walter

Journal:

Biological Chemistry Hoppe-Seyler

Year:

1996

Language:

english

File:

PDF, 2.42 MB

english, 1996

24

The mRNA transportome of the BicD/Egl transport machinery

Vazquez-Pianzola, Paula, Schaller, Bogdan, Colombo, Martino, Beuchle, Dirk, Neuenschwander, Samuel, Marcil, Anne, Bruggmann, Rémy, Suter, Beat

Journal:

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

25

Maize Cytolines Unmask Key Nuclear Genes That Are under the Control of Retrograde Signaling Pathways in Plants

Miclaus, Mihai, Balacescu, Ovidiu, Has, Ioan, Balacescu, Loredana, Has, Voichita, Suteu, Dana, Neuenschwander, Samuel, Keller, Irene, Bruggmann, Rémy

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.00 MB

english, 2016

26

Independent Polled Mutations Leading to Complex Gene Expression Differences in Cattle

Wiedemar, Natalie, Tetens, Jens, Jagannathan, Vidhya, Menoud, Annie, Neuenschwander, Samuel, Bruggmann, Rémy, Thaller, Georg, Drögemüller, Cord, Moore, Stephen

Journal:

Year:

2014

Language:

english

File:

PDF, 639 KB

english, 2014

27

Molecular Markers for Sweet Sorghum Based on Microarray Expression Data

Martín Calviño, Mihai Miclaus, Rémy Bruggmann, Joachim Messing

Journal:

Year:

2009

Language:

english

File:

PDF, 457 KB

english, 2009

28

Regulators of Long-Term Memory Revealed by Mushroom Body-Specific Gene Expression Profiling in Drosophila melanogaster

Widmer, Yves F., Bilican, Adem, Bruggmann, Rémy, Sprecher, Simon G.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

29

Tumor Initiation Capacity and Therapy Resistance Are Differential Features of EMT-Related Subpopulations in the NSCLC Cell Line A549

Tièche, Colin Charles, Gao, Yanyun, Bührer, Elias Daniel, Hobi, Nina, Berezowska, Sabina Anna, Wyler, Kurt, Froment, Laurène, Weis, Stefan, Peng, Ren-Wang, Bruggmann, Rémy, Schär, Primo, Amrein, Micha

Journal:

Year:

2019

Language:

english

File:

PDF, 2.78 MB

english, 2019

30

Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways

Colombo, Martino, Karousis, Evangelos D., Bourquin, Joël, Bruggmann, Rémy, Mühlemann, Oliver

Journal:

Year:

2016

Language:

english

File:

PDF, 1.44 MB

english, 2016

31

Development of new methods for the quantitative detection and typing of Lactobacillus parabuchneri in dairy products

Berthoud, Hélène, Wüthrich, Daniel, Bruggmann, Rémy, Wechsler, Daniel, Fröhlich-Wyder, Marie-Therese, Irmler, Stefan

Journal:

International Dairy Journal

Year:

2016

Language:

english

File:

PDF, 505 KB

english, 2016

32

Conversion of Methionine to Cysteine in Lactobacillus paracasei Depends on the Highly Mobile cysK-ctl-cysE Gene Cluster

Wüthrich, Daniel, Irmler, Stefan, Berthoud, Hélène, Guggenbühl, Barbara, Eugster, Elisabeth, Bruggmann, Rémy

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 4.34 MB

english, 2018

33

Nanopore sequencing improves the draft genome of the human pathogenic amoeba Naegleria fowleri

Liechti, Nicole, Schürch, Nadia, Bruggmann, Rémy, Wittwer, Matthias

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.54 MB

english, 2019

34

Full-genome based molecular characterization of encephalitis-associated bovine astroviruses

Bouzalas, Ilias G., Wüthrich, Daniel, Selimovic-Hamza, Senija, Drögemüller, Cord, Bruggmann, Rémy, Seuberlich, Torsten

Journal:

Infection, Genetics and Evolution

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

35

Transcriptional Regulation of Cysteine and Methionine Metabolism in Lactobacillus paracasei FAM18149

Wüthrich, Daniel, Wenzel, Claudia, Bavan, Tharmatha, Bruggmann, Rémy, Berthoud, Hélène, Irmler, Stefan

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.67 MB

english, 2018

36

Clinical sequencing: is WGS the better WES?

Meienberg, Janine, Bruggmann, Rémy, Oexle, Konrad, Matyas, Gabor

Journal:

Year:

2016

Language:

english

File:

PDF, 408 KB

english, 2016

37

Accumulation of Deleterious Mutations During Bacterial Range Expansions

Bosshard, Lars, Dupanloup, Isabelle, Tenaillon, Olivier, Bruggmann, Rémy, Ackermann, Martin, Peischl, Stephan, Excoffier, Laurent

Journal:

Year:

2017

Language:

english

File:

PDF, 4.50 MB

english, 2017

38

Identification of a second encephalitis-associated astrovirus in cattle

Seuberlich, Torsten, Wüthrich, Daniel, Selimovic-Hamza, Senija, Drögemüller, Cord, Oevermann, Anna, Bruggmann, Rémy, Bouzalas, Ilias

Journal:

Emerging Microbes & Infections

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

39

Indication of Cross-Species Transmission of Astrovirus Associated with Encephalitis in Sheep and Cattle

Boujon, Céline L., Koch, Michel C., Wüthrich, Daniel, Werder, Simea, Jakupovic, Dennis, Bruggmann, Rémy, Seuberlich, Torsten

Journal:

Emerging Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

40

Mitochondrial genome evolution in species belonging to thePhialocephala fortiniis.l. -Acephala applanata speciescomplex

Duò, Angelo, Bruggmann, Rémy, Zoller, Stefan, Bernt, Matthias, Grünig, Christoph R

Journal:

Year:

2012

Language:

english

File:

PDF, 794 KB

english, 2012

41

Draft Genome Sequences of Clostridium tyrobutyricum Strains FAM22552 and FAM22553, Isolated from Swiss Semihard Red-Smear Cheese

Storari, Michelangelo, Wüthrich, Daniel, Bruggmann, Rémy, Berthoud, Hélène, Arias-Roth, Emmanuelle

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 153 KB

english, 2015

42

Evidence for two protein coding transcripts at the Igf2as locus

Carolina, Duart-Garcia, Philippe, Plattet, Rémy, Bruggmann, Cedric A.M.V., Simillion, Irene, Keller, Göran, Andersson, Martin H., Braunschweig

Journal:

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

43

Gene expression in chronic granulomatous disease and interferon-γ receptor-deficient cells treated in vitro with interferon-γ

Frazão, Josias B., Colombo, Martino, Simillion, Cedric, Bilican, Adem, Keller, Irene, Wüthrich, Daniel, Zhu, Zhiqing, Okoniewski, Michal J., Bruggmann, Rémy, Condino-Neto, Antonio, Newburger, Peter E.

Journal:

Journal of Cellular Biochemistry

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

44

Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems

Martín Calviño, Rémy Bruggmann, Joachim Messing

Journal:

Year:

2011

Language:

english

File:

PDF, 3.13 MB

english, 2011

45

Streaming Support for Data Intensive Cloud-Based Sequence Analysis

Issa, Shadi A., Kienzler, Romeo, El-Kalioby, Mohamed, Tonellato, Peter J., Wall, Dennis, Bruggmann, Rémy, Abouelhoda, Mohamed

Journal:

BioMed Research International

Year:

2013

Language:

english

File:

PDF, 1.78 MB

english, 2013

46

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products

Moser, Aline, Wüthrich, Daniel, Bruggmann, Rémy, Eugster-Meier, Elisabeth, Meile, Leo, Irmler, Stefan

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 2.77 MB

english, 2017

47

Increased sensitivity to apoptosis upon endoplasmic reticulum stress-induced activation of the unfolded protein response in chemotherapy-resistant malignant pleural mesothelioma

Xu, Duo, Liang, Shun-Qing, Yang, Haitang, Lüthi, Ursina, Riether, Carsten, Berezowska, Sabina, Marti, Thomas M., Hall, Sean R. R., Bruggmann, Rémy, Kocher, Gregor J., Schmid, Ralph A., Peng, Ren-Wang

Journal:

British Journal of Cancer

Year:

2018

Language:

english

File:

PDF, 2.24 MB

english, 2018

48

Screen of Genes Linked to High-Sugar Content in Stems by Comparative Genomics

Martín Calviño, Rémy Bruggmann, Joachim Messing

Journal:

Year:

2008

Language:

english

File:

PDF, 273 KB

english, 2008

49

MP31-01 FUNCTIONAL MRNA - MICRORNA REGULATORY MODULES IDENTIFIED USING COMPREHENSIVE MOLECULAR CHARACTERIZATION OF BLADDER OUTLET OBSTRUCTION

Monastyrskaya, Katia, Hashemi Gheinani, Ali, Rehrauer, Hubert, Aquino Fournier, Catharine, Keller, Irene, Bruggmann, Rémy, Burkhard, Fiona C.

Journal:

The Journal of Urology

Year:

2015

Language:

english

File:

PDF, 272 KB

english, 2015

50

Globally distributed root endophytePhialocephala subalpinalinks pathogenic and saprophytic lifestyles

Schlegel, Markus, Münsterkötter, Martin, Güldener, Ulrich, Bruggmann, Rémy, Duò, Angelo, Hainaut, Matthieu, Henrissat, Bernard, Sieber, Christian M. K., Hoffmeister, Dirk, Grünig, Christoph R.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.28 MB

english, 2016

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